Template-free 2D particle fusion in localization microscopy
Heydarian, Hamidreza et al. (2018). "Template-free 2D particle fusion in localization microscopy." Nature Methods. 15.
CV
Education
- Ph.D, Delft University of Technology, the Netherlands
- M.S. in Visual Computing, Saarland University, Germany
- B.S. in Electrical Engineering, Ferdowsi University of Mashhad, Iran
Work experience
- October 2019 - present: Postdoc researcher
- Delft University of Technology
- October 2015 - October 2019: PhD candidate
- Delft University of Technology
- Supervisor: Bernd Rieger, Sjoerd Stallinga
Skills
- Image processing and computer vision
- Single molecule localization microscopy
- Programming
- MATLAB
- Python
- C/C++
Publications
Three dimensional particle averaging for structural imaging of macromolecular complexes by localization microscopy
Hamidreza, Heydarian et al. (2019). "Three dimensional particle averaging for structural imaging of macromolecular complexes by localization microscopy." biorxiv.
DATA FUSION IN LOCALIZATION MICROSCOPY
HAMIDREZA HEYDARIAN, MARK BATES, FLORIAN SCHUEDER, RALF JUNGMANN, SJOERD STALLINGA, and BERND RIEGER, Computational Modeling: From Chemistry to Materials to Biology. February 2021, 201-204
3D particle averaging and detection of macromolecular symmetry in localization microscopy
Hamidreza, Heydarian et al. (2021). "3D particle averaging and detection of macromolecular symmetry in localization microscopy." Nature Communications.
Detecting structural heterogeneity in single-molecule localization microscopy data
Huijben, T.A., Heydarian, H., Auer, A. et al. Detecting structural heterogeneity in single-molecule localization microscopy data. Nat Commun 12, 3791 (2021).
Joint registration of multiple point clouds for fast particle fusion in localization microscopy
Wenxiu Wang, Hamidreza Heydarian, Teun A P M Huijben, Sjoerd Stallinga, Bernd Rieger, Joint registration of multiple point clouds for fast particle fusion in localization microscopy, Bioinformatics, Volume 38, Issue 12, June 2022, Pages 3281–3287, https://doi.org/10.1093/bioinformatics/btac320
Analysis of binding site dependent labelling efficiency for DNA-PAINT using particle fusion
Heydarian, H., Stallinga, S., & Rieger, B. (2024). Analysis of binding site dependent labelling efficiency for DNA-PAINT using particle fusion. Optics Communications, 130834. https://doi.org/10.1016/j.optcom.2024.130834
Talks
Single Molecule Localization Microscopy Symposium (SMLMS) 2016
Conference oral presentation at Ecole Polytechnique Federale de Lausanne, Switzerland, Lausanne, Switzerland
Dutch Biophysics 2016
Conference oral presentation at NH Koningshof, Veldhoven., Veldhoven, Netherlands
Quantitative BioImaging Conference 2017
Conference oral presentation at Texas A&M University, College Station, TX, USA
Focus On Microscopy 2017
Conference oral presentation at Palais des congrès de Paris, Bordeaux, France
Single Molecule Localization Microscopy Symposium (SMLMS) 2017
Conference oral presentation at King’s College London, Guy’s Campus, London, United Kingdom
Dutch Biophysics 2017
Conference oral presentation at NH Koningshof, Veldhoven., Veldhoven, Netherlands
Quantitative BioImaging Conference 2018
Conference oral presentation at Georg August University Göttingen, Faculty of Physics, Göttingen, Germany
International Conference on Nanoscopy (ICON Europe) 2018
Conference oral presentation at FH Bielefeld, Bielefeld, Germany
Single Molecule Localization Microscopy Symposium (SMLMS) 2018
Conference oral presentation at Harnack Haus of the Max-Planck-Society, Berlin, Germany
Dutch Biophysics 2018
Conference oral presentation at NH Koningshof, Veldhoven., Veldhoven, Netherlands
Focus On Microscopy 2019
Conference poster presentation at Queen Elizabeth II (QEII) conference centre, London, United Kingdom
Single Molecule Localization Microscopy Symposium (SMLMS) 2019
Conference oral presentation at Theater de Veste, Delft, the Netherlands
Focus On Microscopy 2021
Conference poster presentation at Online, the Netherlands